If you’re looking for a quick and delicious snack that packs a protein punch, these High-Protein Bagel Bites are just what you need! They’re not only gluten-free but also super easy to whip up in the air fryer. Whether you’re hustling through a busy morning or need a tasty treat for an afternoon pick-me-up, these bites will quickly become a family favorite. They’re perfect for everything from casual gatherings to cozy family breakfasts.
These little bites of goodness are filled with creamy cream cheese and are delightfully flavorful thanks to the Everything But The Bagel seasoning. Plus, they make for a fantastic meal prep option—just make a batch ahead of time, and you’ve got snacks ready to go!
Why You’ll Love This Recipe
- Quick and Easy: With just 10 minutes of prep and 6 minutes in the air fryer, you can enjoy these bagel bites in no time!
- High in Protein: Each bite is packed with protein, making them an excellent choice for keeping your energy levels up throughout the day.
- Family-Friendly: Kids love them! These bagel bites are fun to eat and can easily be customized to suit picky eaters.
- Versatile Snack: Perfect for breakfast, snacks, or even as appetizers at parties—these bites fit any occasion.
- Wholesome Ingredients: Made with simple, nutritious components that you can feel good about serving.

Ingredients You’ll Need
Making these High-Protein Bagel Bites is super simple, thanks to these wholesome ingredients. You probably have most of them on hand already!
For the Dough
- ⅔ cup all-purpose gluten-free flour
- 1 tsp baking powder
- 1 scoop (30g) unflavored protein powder
- Pinch of salt
- ⅔ cup plain unsweetened Greek yogurt
For the Filling
- 10 tsp cream cheese (about 1 tsp per bite)
Optional Topping
- 1 egg, lightly beaten (for egg wash)
- Everything But The Bagel seasoning
Variations
One of the best things about this recipe is how flexible it is! Feel free to mix things up based on your preferences or what’s available in your pantry.
- Add some spice: Mix in some diced jalapeños or red pepper flakes into the dough for a zesty kick.
- Cheese lovers rejoice: Swap out some of the cream cheese for shredded mozzarella or cheddar for an extra cheesy version.
- Herb-infused goodness: Add fresh herbs like chopped chives or dill into the dough for added flavor.
- Make it vegan: Substitute Greek yogurt with non-dairy yogurt and use a flax egg instead of the egg wash for a vegan-friendly option.
How to Make High-Protein Bagel Bites
Step 1: Prepare the Dough
In a mixing bowl, combine gluten-free flour, baking powder, protein powder, and salt. Mixing these dry ingredients first ensures that everything is evenly distributed before adding the wet ingredients.
Step 2: Incorporate Greek Yogurt
Mix in the plain unsweetened Greek yogurt until you have a sticky dough. This step is crucial because it gives moisture to your bagel bites while enhancing their protein content.
Step 3: Shape Your Bagel Bites
Flour your surface lightly and divide the dough into 10 pieces. Roll each piece into a ball, then flatten it out slightly. Adding cream cheese in the center makes each bite a delightful surprise when you take a bite!
Step 4: Seal Them Up
Seal each ball around the cream cheese filling and reshape if needed. This step helps keep all that creamy goodness inside while they cook.
Step 5: Add Seasoning
Brush your bagel bites with egg wash or spray them lightly with oil if skipping the egg. Sprinkle generously with Everything But The Bagel seasoning—this is where they get their signature flavor!
Step 6: Air Fry Your Bites
Preheat your air fryer to 350°F for about 5 minutes, then place your bagel bites inside and air fry them for 5–6 minutes until golden brown. This quick cooking method keeps them crispy on the outside while remaining soft and delicious on the inside.
Step 7: Enjoy!
Once they’re done, let them cool slightly before digging in while they’re still warm! These High-Protein Bagel Bites are perfect served alone or paired with your favorite dipping sauce. Enjoy!
Pro Tips for Making High-Protein Bagel Bites
Creating perfect High-Protein Bagel Bites is easy with a few helpful tips!
Use fresh ingredients: Ensuring your Greek yogurt and baking powder are fresh will enhance the flavors and texture of your bagel bites, making them light and fluffy.
Don’t overwork the dough: Mixing just until combined helps maintain the right consistency. Overworking can make your bagel bites tough instead of tender.
Adjust seasoning to taste: Feel free to experiment with different seasonings besides Everything But The Bagel. Adding garlic powder or dried herbs can elevate the flavor profile.
Monitor cooking time: Since air fryers can vary, keep an eye on your bagel bites as they cook. They should be golden brown but not overdone for the best texture.
Let them cool slightly before serving: Allowing the bagel bites to rest for a few minutes enhances their flavor and makes them easier to handle.
How to Serve High-Protein Bagel Bites
These High-Protein Bagel Bites are delightful on their own, but presenting them well can elevate your dining experience!
Garnishes
- Chopped chives or green onions: A sprinkle adds color and a fresh bite that complements the creaminess of the cheese.
- Red pepper flakes: For those who enjoy a little heat, these add a spicy kick that pairs beautifully with the savory bagels.
Side Dishes
- Fresh fruit salad: A mix of seasonal fruits provides a refreshing contrast to the savory bagel bites while adding natural sweetness.
- Greek yogurt dip: Serve with a side of flavored Greek yogurt (like ranch or tzatziki) for an extra creamy element that enhances each bite.
- Veggie sticks: Carrot and cucumber sticks offer crunch and freshness, making for a well-rounded meal or snack.

Make Ahead and Storage
These High-Protein Bagel Bites are perfect for meal prep, allowing you to enjoy a quick, healthy snack or breakfast throughout the week.
Storing Leftovers
- Store any leftover bagel bites in an airtight container in the refrigerator.
- They can be kept for up to 3 days without losing their deliciousness.
Freezing
- To freeze, allow the bagel bites to cool completely.
- Place them in a single layer on a baking sheet and freeze until solid.
- Transfer to a freezer-safe container or bag, where they can be stored for up to 2 months.
Reheating
- For best results, reheat in the air fryer at 350°F for about 3-4 minutes.
- Alternatively, you can microwave them for about 30-45 seconds until warmed through.
FAQs
Here are some common questions you might have about making High-Protein Bagel Bites.
Can I use a different type of protein powder in High-Protein Bagel Bites?
Yes! You can substitute with flavored protein powders, but keep in mind that this may alter the taste of your bagel bites. Unflavored protein powder is recommended for the best flavor balance.
How can I make these High-Protein Bagel Bites dairy-free?
To make these bagel bites dairy-free, you can use a dairy-free cream cheese alternative and choose a plant-based yogurt. Ensure that your protein powder is also dairy-free.
What’s the best way to customize my High-Protein Bagel Bites?
Feel free to add herbs or spices to the dough or mix in chopped vegetables like spinach or bell peppers. You can also top them with sesame seeds or sunflower seeds for added crunch!
Final Thoughts
I hope you enjoy making these delightful High-Protein Bagel Bites as much as I do! They are not only easy to prepare but also provide a nutritious boost whenever you need it. Whether it’s for breakfast or a quick snack, I encourage you to give this recipe a try and share it with friends and family. Happy cooking!
High-Protein Bagel Bites
High-Protein Bagel Bites are the perfect on-the-go snack that combines convenience with nutrition. These gluten-free bites are filled with creamy goodness and seasoned to perfection, making them a family favorite for any occasion. Whether you need a quick breakfast, a satisfying afternoon treat, or an appetizer for your next gathering, these bagel bites are quick to prepare in your air fryer.
- Prep Time: 10 minutes
- Cook Time: 6 minutes
- Total Time: 16 minutes
- Yield: Serves 10 bagel bites 1x
- Category: Snack
- Method: Air Frying
- Cuisine: American
Ingredients
- ⅔ cup all-purpose gluten-free flour
- 1 tsp baking powder
- 1 scoop (30g) unflavored protein powder
- Pinch of salt
- ⅔ cup plain unsweetened Greek yogurt
- 10 tsp cream cheese (for filling)
Instructions
- Preheat your air fryer to 350°F.
- In a mixing bowl, combine gluten-free flour, baking powder, protein powder, and salt.
- Mix in the Greek yogurt until a sticky dough forms.
- Divide dough into 10 pieces and roll each into a ball. Flatten slightly and place cream cheese in the center.
- Seal the dough around the filling and reshape if needed.
- Brush with egg wash or oil and sprinkle with Everything But The Bagel seasoning.
- Air fry for 5–6 minutes until golden brown.
Nutrition
- Serving Size: 1 bagel bite (40g)
- Calories: 120
- Sugar: 1g
- Sodium: 160mg
- Fat: 3g
- Saturated Fat: 2g
- Unsaturated Fat: 1g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 1g
- Protein: 8g
- Cholesterol: 5mg



